Friday, July 22, 2022

Nutritional and Protein Characterization of the Leachate Produced in the São Paulo Zoo Composting Unit

Introduction

In recent years the, Foundation Zoological Park of São Paulo (FZPSP) implemented and put into operation the Organic Composting Production Unit (OCPU). The main goal of this action was to give a new destination to the organic waste collected daily in the park since before that sustainable attitude, this waste had the same fate as the usual household waste: landfills. Currently, the composting produced in OCPU serves as fertilizer for the park gardens and food cultivation in the Rural Production Unit (UPR), where much of the food served to the animals in the Zoo (ZOO) and Zoo Safari comes from Bernal et al [1].
Leachate is a liquid residue of high organic contents and strong color produced during the percolation of water through the composted organic waste. During the passage of this water, various chemical, physico- chemical and fermentation processes occur concurrently and, for this reason, various organic and inorganic compounds, besides that microorganism and its metabolites can be transferred to the leachate. Thus, leachate from different sources can be considered as a distinct matrix with specific characteristics.
Currently, what is known of leachate are those generated in landfills that have a high toxic potential. But it can be considered that the one produced during the composting in FZPSP is different, due to the nature of the organic material and also the water used to cool the composters, which runs several times by the composting systems. Therefore, because there is very few information on leachates from different sources other than municipal landfills, by the differentiated characteristics of the process and also of the materials used during composting at OCPU there was interest in studying this particular leachate, the potential of this matrix in bringing nutritional and proteomic information.

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Monday, July 18, 2022

An Overview on the Roles of Bacterial Small RNAs in Regulatory Networks

Abstract

Bacterial small RNAs (sRNAs) are important molecules that regulate the expression of certain genes, depending on the different growth conditions of the cell and they are widely used by bacteria. sRNAs help the bacteria survive by being involved in many cellular processes such as nutrient deficiency, mobility, pH adaptation and oxidative stress. Current studies have succeeded in elucidating how sRNAs modulate the expression of different transcription factors. Thus, the integration of sRNA activity into comprehensive regulatory networks has begun to take place. Regulatory networks include regulatory circuits that have characteristic functions. In this review, the roles of some characterized sRNAs in regulatory networks and their effects on transcription factors are discussed. Furthermore, we describe specific regulatory circuits containing base pairing sRNAs and their importance in global regulation. 

Read more about this article: https://lupinepublishers.com/biotechnology-microbiology/fulltext/an-overview-on-the-roles-of-bacterial-small-rnas-in-regulatory-networks.ID.000123.php

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Thursday, March 17, 2022

Lupine Publishers | Anthocyanin: A Revolutionary Pigment for Textile industry

  Lupine Publishers | Current Trends on Biotechnology & Microbiology

Abstract

Chemical dyes from textile industry continuously degrading environment. Dyes from natural resources are proved to be ecofriendly since ancient times. Anthocyanin from plants is not only a natural dye but have many other potential characteristics. Colour of anthocyanin varies with pH which shows its adaptability to nature with varied environmental conditions Research showed that they possess antimicrobial properties. Advance research using Anthocyanin and its related gene, textile could develop with antibacterial and self-fluorescence properties. Anthocyanin is also known to protect plant in extreme weather conditions. This property could be used to develop super cloths. Anthocyanin has been used in organic solar cells because of their ability to convert light energy into electrical energy. Anthocyanin is also known to double the Shelf Life of plants. The application of genetic modification using properties of Anthocyanin in textile producing plants could bring revolution.

Keywords: Anthocyanin; Solar cells, Shelf life, Visual markers, Fluorescence, pH

Mini Review

Dyeing process in textile industry is one of the major breakthroughs in the evolution of fashion. On the other hand, it is well-known fact that fast fashion today degrades the environment. The textile industry produces and uses approximately 1.3 million tons of dyes, pigments and dye precursors, valued at around $23 billion, almost all of which is manufactured synthetically [1]. Textile clothing ends up in landfills and chemical dyes leach into the water bodies. Some of the chemicals found in synthetic dyes are mercury, lead, chromium, copper, sodium chloride, toluene, and benzene. Exposure to large doses of these substances can be toxic and can have severe effects in the human body.

Nature has given us all necessary molecules for sustainable development, especially in form of secondary metabolites from plant kingdom. Natural pigments, one of the secondary metabolites, are alternative for chemical dyes. Natural dyes are environment friendly and have many advantages over synthetic dyes. Natural dyes are suitable for skin and are biodegradable. Anthocyanin is one of the pigments that can be used as a natural dye [2]. Anthocyanin pigment can very well used as dye material giving primarily different shades of blue purple to red. The largescale production of textile dyed with anthocyanin is a new concept for the textile industry.

The word ‘anthocyanin’ is derived from the Greek language. ‘Anthos’ translates into flower and ‘kianos’ means blue. Anthocyanins belong to a group flavonoid synthesized via phenylpropanoid pathway. They are the largest group of watersoluble natural pigments. They are present in flower, fruit, stem, leaves and root of plants. They soluble in water and generally occur in the aqueous cell sap. They are found in fruits and vegetables such as red cabbage, strawberries, grape skin, blueberries and raspberries [3]. Anthocyanin extract of Hibiscus rosa-sinensis flowers yield shades with good fastness properties [4]. Anthocyanin is soluble in aqueous solutions. It becomes brighter in lower pH range and becomes blue at higher pH levels. Colour of anthocyanin varies with pH which shows its adaptability to nature with varied environmental conditions [5].

Research shows that Anthocyanin has many significant properties along with its coloring nature. Some are discussed as follows (Figure 1).

 Lupinepublishers-openaccess-biotechnology-microbiology

A. Antimicrobial properties: Anthocyanin has been proved effective against bacteria and fungi [6]. Antibacterial fabric / infectious disease resistant fabric could be developed using anthocyanin. The application can also be used in medical linen and military uniforms. Antimicrobial clothing can prevent the growth and spread of microorganisms within the fabric and surrounding.

B. Anthocyanin as visual markers: Anthocyanins fluorescence, enabling a tool for plant cell research to allow live cell imaging without a requirement for other fluorochromes [7]. Its ability gives off fluoresce could be used for developing new advance self-fluorescence textile. Anthocyanin production may be engineered into genetically-modified materials to new generation cloths.

C. Anthocyanins double the shelf life: There are certain fabrics that do not last for a long time, although of high quality and great demand. Anthocyanins can play a role here. Life of fabrics can be increased by adding anthocyanins. Anthocyanins double the Shelf Life of tomatoes by delaying over ripening and reducing susceptibility to grey Mold [8]. This property can be genetically engineered into fabrics and used to improve shelf life of materials such as silk or chiffon.

D. Anthocyanin for extreme weather conditions: Research done for photo electrochemical cell utilizing an Anthocyanin Dye- Sensitized TiO2 Nano crystalline Electrode [9]. With advanced research, fabric could be developed with dye anthocyanin and some nanoparticle and could be proved as excellent absorber of solar energy. This property can be utilized for development of fabric for cold regions. Jackets can be manufactured which absorb the sun rays and transform them into heat. Anthocyanin has also shown a protective role in plants against extreme temperatures [10]. Tomato plants protect against cold stress with anthocyanin countering reactive oxygen species, leading to a lower rate of cell death in leaves. With advance research, properties shown by anthocyanin can be used for protective fabric for prevention from heat [10] also.

E. Anthocyanins: dye-sensitized solar cells: Anthocyanins have been used in organic solar cells because of their ability to convert light energy into electrical energy. Benefits using dye-sensitized solar cells instead of traditional p-n junction silicon cells include lower purity requirements and abundance of component materials, as well as the fact that they may be produced on flexible substrates, making them amenable to rollto- roll printing processes [11]. This property of anthocyanin could be used in textile industries to make super cloths.

Conclusion

Research has proven that anthocyanin holds great potential for fabric industries not only as dye but for development of “super cloths”. The world is now moving towards ‘Eco-fashion’. The use of natural dyes such as anthocyanin may bring revolution in textile industries. The application of genetic modification can bring about many other benefits such as visual markers and solar dyes which will increase the output of the fabric industry thus reducing the total cost. The washing fastness is also considerably good in anthocyanin dyed fabric. This pigment has good scope in the commercial dyeing of cotton, silk and wool for garment industry.

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Friday, February 4, 2022

Lupine Publishers | Thoughts on the Reference Range of Laboratory Tests

  Lupine Publishers | Current Trends on Biotechnology & Microbiology


Abstract

This article discusses the value research data in Guan’s paper published on medRxiv, February 9, 2020. In terms of experimental data, the preprinted paper is by far the largest sample number of 2019-new coronavirus (SARS-CoV-2) infected patients. Including 552 hospitals from 31 provinces in China as of January 29, 2020, a total of 1,099 cases. Laboratory evaluations include multiple blood cell counts, blood chemistry, coagulation tests, liver and kidney function, electrolytes, C-reactive protein,

Keywords: Reference range; 2019-nCoV, SARS-CoV-2, 2019-nCoV ARD, COVID-19

Introduction

Professor Guan et al. [1] recently published an article “clinical characteristics of 2019 novel coronavirus infection in china”. It is a preprinted version of medRxiv on BMJ publishing platform. The authors of the article covered all frontline anti-epidemic frontlines including Guangzhou Institute of Respiratory Disease, Wuhan Jinyintan Hospital, Institute of Hematology, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, The Central Hospital of Wuhan, Huanggang Central Hospital, Department of Medicine and Therapeutics, et al. The Chinese University of Hong Kong. In this retrospective study, the authors extracted the data on 1,099 patients with laboratory-confirmed 2019-nCoV ARD (COVID-19) from 552 hospitals in 31 provinces/ provincial municipalities through January 29th, 2020. So far, it is the largest number of cases collected, the clinical characteristics of the patients with the most complete distribution, and the most comprehensive Chinese experience of SARS-CoV-2 treatment are released to the world.

In the preprinted paper, the authors found that fever occurred in only 43.8% of patients with 2019-nCoV ARD (COVID-19) but developed in 87.9% following hospitalization. Demographic data showed a median age of 47.0 years (IQR, 35.0-58.0 years). 2.09% were healthcare workers. The median incubation period was 3.0 days (range, 0 to24.0). Patients who underwent chest computed tomography on admission, 76.4% manifested as pneumonia. There are normal radiological manifestations in some infected patients. In addition, the researchers obtained a series of laboratory findings, such as 82.1% and 36.2% of patients had lymphopenia and thrombocytopenia, respectively. Overall, leukopenia was observed in 33.7% of patients. Most patients demonstrated elevated levels of C-reactive protein, rare increases in D-dimer levels, and so on. The standards used by the authors in analyzing laboratory data do not meet the standards of the People’s Republic of China’s health industry (WS/T 405-2012). We will take this article “Clinical Characteristics of New Coronavirus Infections in China 2019”as an example to explore the reference scope of laboratory test.

Methods and Results

The report delineated 1,099 patients with 2019-nCoV ARD (COVID-19) from 552 hospitals in 31 provinces/province-level municipalities. Cases were diagnosed based on the WHO interim guidance [2]. Patients were classified into severe and non-serious 2019-nCoV ARD (COVID-19) based on the guideline of the American Thoracic Society and Infectious Disease Society of America [3]. Radiologic and laboratory findings was also based on the grouping of severe and non-severe case patients. Table 1 showed lymphopenia was observed in 82.1% of patients on admission (79.3% in nonsevere cases; 95.5% in severe cases), and thrombocytopenia in 36.2% (31.6% in non-severe cases; severe cases 57.7%). Overall, leukopenia was observed in 33.7% of patients (28.1% in nonsevere cases; 61.1% in severe cases).

 

Hemoglobin (Hb) showed almost no significant decrease. There are significant differences of Hb level between non-serious cases and severe cases. It should be noted that only 978 of the 1099 cases provided complete blood routine test data, while the data of absolute value of lymphocytes and platelet counts were less than 978 cases. This indicating that there is no uniform requirement for the integrity of test data.

Most patients (60.7%) demonstrated elevated levels of C-reactive protein levels (56.4% in non-severe cases; 81.5% in severe cases), rare increases in alanine aminotransferase, aspartate aminotransferase, creatine kinase, and D-dimer. The authors only provided 560 cases of the D-dimer detection value, in which 46.4% patients manifest the increase tendency (43.2% in non-severe cases; 59.6% in severe cases). Severe cases had more prominent laboratory abnormalities (i.e., leukopenia, lymphopenia, thrombocytopenia, elevated C-reactive protein levels) as compared with non-severe cases (all P<0.05).

Discussion

In terms of experimental data, the preprinted paper is by far the largest sample number of 2019-new coronavirus (SARS-CoV-2) infected patients. We noticed that the author analyzed laboratory data, especially blood routine test data, and reached conclusions such as leukopenia, lymphopenia, thrombocytopenia, and elevated C-reactive protein in COVID-19 patients according to certain criteria, which is not conform to the standards of the People’s Republic of China’s health industry document WS/T405-2012.

For example, the leukopenia defined in the article is based on less than 4.0×109/L; the lymphocyte reduction is based on less than 1.5×109/L; the thrombocytopenia is based on less than 150×109/L; and the C-reactive protein level is based on be equal or greater than 10mg/L was abnormal (Table 1).

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Plus-minus values are means ± SD. Lymphopenia denoted the lymphocyte count of less than 1,500 per cubic millimeter. Thrombocytopenia denoted the platelet count of less than 150,000 per cubic millimeter. PaO2:FiO2 was defined as the ratio of the partial pressure of arterial oxygen to the fraction of inspired oxygen.

P values denoted the comparison between mild-moderate cases and severe cases.

As for D-dimer, the author took greater than or be equal 0.5mg/L as the standard for abnormal. However, the different hospitals in China, the difference in methods and reagents used, it is generally considered that the reference interval is less than 0.3mg/L or less than 0.5mg/L. The article uniformly took be equal or greater than 0.5mg/L as the standard for abnormal elevation. Obviously, the 552 hospitals as the participating units are unlikely to use exactly the same methods and reagents.

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The China national industry standard blood routine test reference range was released in 2012, and it has been nearly eight years. The following table lists the reference range for the analysis of venous blood in the Chinese adult population for instrumental detection methods (Table 2).The preprinted article did not adopt this health industry standard, which shows that the criterion has not been accepted and recognized by Chinese clinicians. It is a very important topic whether national industry standards, especially reference ranges, are recognized by the majority of Chinese clinicians. Reference range is the basis for clinicians diagnosing diseases.

In view of the fact that the research object is Chinese, we suggest that researchers should try to adopt the domestic recommended standards instead of using the previous concepts and foreign standards. If domestic industry standards are used in this article, their statistical results and proportions may be quite different. In particular, the absolute value of lymphocytes should be significantly different, which may lead to large differences in conclusions. As we all know, the new coronavirus epidemic recently occurred in Wuhan city, Hubei Province, China has spread to other parts of China and abroad. As an acute respiratory infectious disease, the disease has been included in the Class B infectious diseases stipulated in the Law of the People’s Republic of China on the Prevention and Control of Infectious Diseases and is managed as a Class A infectious disease. The National Health Committee of the People’s Republic of China has continuously revised the “Diagnosis and Treatment Program for Pneumonia of New Coronavirus Infection”, which is currently in its fifth edition on a trial basis. The guidelines point out that the diagnosis of suspected cases of COVID-19 should be combined with a comprehensive analysis of epidemiological history and clinical manifestations.

The clinical manifestations include

1. Fever and / or respiratory symptoms

2. The imaging characteristics of pneumonia described above (abbreviated in this article)

3. The total number of white blood cells is normal or decreased in the early stage of onset, or the lymphocyte count is decreased.

Any case with epidemiological history that meets any two of the clinical manifestations can be determined as a suspected case. Once a misdiagnosis occurs due to a misjudgment of the reference value range, it is likely to cause severe unforeseen consequences.

The biochemical test results involved in the preprint version of the article also did not adopt domestic standards, and the determination of many biochemical indicators is also related to gender, which are issues that clinicians should pay attention to. If the author team includes medical laboratory experts, I believe that the aforementioned laboratory data and reference ranges, and methodological flaw may be avoided. As stated by the authors, some cases had incomplete documentation of the exposure history, symptoms and laboratory testing given the variation in the structure of electronic database among different participating site and the urgent timeline for data extraction. Some cases were diagnosed in out-patient settings where medical information was briefly documented, and incomplete laboratory testing was applied.

On the other hand, in clinical laboratory practice, we recommend that laboratory technician communicate with clinicians to scientifically explain the clinical significance and reference range of laboratory data. Only in this way, a new reference range can be adopted and applicated in the hospital. Secondly, whether it is fully adopted or partially adopted, it depends on how technicians connect closely with the clinician and perform corresponding verification. The national industry standard is only a recommended standard, not a mandatory standard. Clinicians are generally rigorous when selecting a standard for disease diagnosis. The preprint article illustrates exactly this problem. When clinicians judge the test data, they have not adopted our health industry standards as the judgment standard. It is a typical example of the disconnection between laboratory and clinical. This is a problem worthy of laboratory physician’s reflection and deep thought.

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FGFR Gene Mutation and Pfeiffer Syndrome

Abstract Pfeiffer syndrome is a genetic disease caused by a defect in the FGFR-1 or FGFR-2 genes. This syndrome affects the skeleton, whet...